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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015906736.1_cds_XP_016456904.1_50692
CDS Infomation

[gene=LOC107780824] [db_xref=GeneID:107780824] [protein=rab9 effector protein with kelch motifs-like] [protein_id=XP_016456904.1] [location=join(90176..90237,90332..90429,91508..91646,91728..91756,92470..92566,92644..92699,92794..92901,93869..93925,94401..94492,95434..95518,95813..95965,96523..96608,97046..97213,97305..97417,98290..98380,98821..98892)] [gbkey=CDS]
Sequence

ATGCATTACTGGATTCGAGCATCTCCCTCAGATTTCGCCGGAACAATTCCACAACCTCGA
AGTGGACACACTGCAGTGAACATTGGGAAATCGAAAGTTGTGGTGTTCGGAGGACTACTT
GACAAGAAGTTCCTTAATGACATCACTGTCTATGACATTGAAAACAAATTGTGGTTTCAG
CCAGAGTGCACAGGCAGTGGTTCTGATGGCCAAGTGGGTCCCAGCCCACGAGCATTCCAC
GTTGCTGTATCAATTGACTGTCATATGTTCATCTTTGGTGGGAGATCTGGCAGTAGAAGG
TTAGGGGATTTTTGGGTTCTGGATACTGATATATGGCAATGGTCAGAGCTGACAAGTTTT
GGTGACTTACCTTCTGCAAGGGATTTTGCAGCTGCTTCAGCCATTGGAAACAGTAAAATT
GTTATGTATGGTGGCTGGGATGGTAAAAAGTGGTTGTCAGATGTCTATATCTTGGACACA
ATGTCTCTTGAGTGGAGGGAGTTATCTGTTTTGGGAACTTTACCGCCGCCTAGATGTGGC
CATACTTCTACTATGGTTGAAAAAAGATTGCTTGTCTATGGTGGTAGAGGAGGTGGAGGG
CCAATCATGGCTGACTTGTGGGCTTTGAAGGGCCTAATTGAAGAAGAGAATGAAAGCCCT
GGATGGACCCAACTGAAGCTTCCAGGTCAAGCTCCTACGGCACGTTGCGGACATACAGTT
ACATCCGGAGGATTCCATCTGTTGTTATTTGGAGGGCATGGAACTGGTGGTTGGTTGAGT
CGGTACGATGTTTACTACAATGATTGTGTTGTTTTAGACAGGGTGTCTGTACAGTGGAAA
CGCCTAGCAACTATGAATGAACCGCCAGCTGCACGAGCATACCACTCAATGACCTCCATT
GGGGCACGATATTTGTTGTTTGGAGGGTTTGATGGAAAATCAACTTATGGTGATCTCTGG
TGGTTAGTTCCAGAAGATGATCCAATTGCTAAGCGCGTAACAGCTTCTCCTCCCGAGGGC
ATTCATGAAAATCAGCATGTTTCAATGACAAGTATGGAGAAGGAGAGGCAAATGCAAGAA
GATGCTGTGGCAGAGTTGCAGAAAAGGATTGGAGTTTCAGTGTCCGTCTCCAATTCCAAT
ATGAAGAAAATTGTAGATGAGTTGGAAGATACAGAACTATTAGAATTGGCATCTAAATTG
GTTGGAGAGAGAGCTCTCAGTAATAAAGAGGCTGTACAAGCCCTTCGTGACCATTGGTCA
AGGTCCTCGCCAAAGTCAATTCAATTAAAGGAGCTTAGCCCATTACTTCGTGACTACCAG
CGCATGATTACCCGCCTTCAAAAGGAAAAGCTAAGATCACTCTTACAATCCTCGAAACCT
GGATCTCTGGGGAAAGAGACTTATAGATTCCATCATATCAGAAATGTTAGTCAGCTACGT
ATGGATGATATACCCCATCTGCTAGCTGAGTACAGACAACTCGTTGTGGATATAGCAGCA
GACTAA

Peptide Sequence

PEP ID

XP_016456904.1
PEP Infomation

PREDICTED: rab9 effector protein with kelch motifs-like [Nicotiana tabacum]
Sequence

MHYWIRASPSDFAGTIPQPRSGHTAVNIGKSKVVVFGGLLDKKFLNDITVYDIENKLWFQ
PECTGSGSDGQVGPSPRAFHVAVSIDCHMFIFGGRSGSRRLGDFWVLDTDIWQWSELTSF
GDLPSARDFAAASAIGNSKIVMYGGWDGKKWLSDVYILDTMSLEWRELSVLGTLPPPRCG
HTSTMVEKRLLVYGGRGGGGPIMADLWALKGLIEEENESPGWTQLKLPGQAPTARCGHTV
TSGGFHLLLFGGHGTGGWLSRYDVYYNDCVVLDRVSVQWKRLATMNEPPAARAYHSMTSI
GARYLLFGGFDGKSTYGDLWWLVPEDDPIAKRVTASPPEGIHENQHVSMTSMEKERQMQE
DAVAELQKRIGVSVSVSNSNMKKIVDELEDTELLELASKLVGERALSNKEAVQALRDHWS
RSSPKSIQLKELSPLLRDYQRMITRLQKEKLRSLLQSSKPGSLGKETYRFHHIRNVSQLR
MDDIPHLLAEYRQLVVDIAAD

Transcript Sequence

Gene sequence data has not been registered.